Search results for "Hirshfeld surface"

showing 10 items of 41 documents

The enrichment ratio of atomic contacts in crystals, an indicator derived from the Hirshfeld surface analysis

2014

An enrichment ratio is derived from the decomposition of the crystal contact surface between pairs of interacting chemical species. The propensity of different contact types to form is investigated.

inorganic chemicalsHydrogeneducationStackingchemistry.chemical_element010402 general chemistrybehavioral disciplines and activities01 natural sciencesBiochemistryCrystal[CHIM.CRIS]Chemical Sciences/CristallographyHirshfeld surface analysisGeneral Materials ScienceChemical compositionhealth care economics and organizationsCrystallography010405 organic chemistryChemistryHydrogen bondIntermolecular forceGeneral ChemistryCondensed Matter::Mesoscopic Systems and Quantum Hall EffectCondensed Matter PhysicsResearch Papersfingerprint plotshumanities0104 chemical sciencesCrystallographyChemical speciesQD901-999Fluorineenrichment ratiocrystal packingIUCrJ
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Crystal structure and Hirshfeld surface analysis of (E)-3-(benzylideneamino)-5-phenylthiazolidin-2-iminium bromide

2020

The central thiazolidine ring of the title salt, C16H16N3S+center dot Br-, adopts an envelope conformation, with the C atom bearing the phenyl ring as the flap atom. In the crystal, the cations and anions are linked by N-H center dot center dot center dot Br hydrogen bonds, forming chains parallel to the b-axis direction. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H center dot center dot center dot H (46.4%), C center dot center dot center dot H/H center dot center dot center dot C (18.6%) and H center dot center dot center dot Br/Br center dot center dot center dot H (17.5%) interactions.

chemistry.chemical_classificationcrystal structureCrystallographyHydrogen bondIminiumSalt (chemistry)General ChemistryCrystal structureCondensed Matter::Mesoscopic Systems and Quantum Hall EffectCondensed Matter PhysicsRing (chemistry)Crystalchemistry.chemical_compoundCrystallographychemistryBromideQD901-999Atomcharge assisted hydrogen bondinghirshfeld surface analysisthiazolidine ringenvelope conformationGeneral Materials ScienceActa Crystallographica Section E: Crystallographic Communications
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Synthesis, X-ray Structure of Two Hexa-Coordinated Ni(II) Complexes with s-Triazine Hydrazine Schiff Base Ligand

2023

The hydrazine s-triazine ligand (E)-4,4’-(6-(2-(1-(pyridin-2-yl)ethylidene)hydrazinyl)-1,3,5-triazine-2,4-diyl)dimorpholine (DMPT) was used to synthesize two new Ni(II) complexes via a self-assembly technique. The two complexes were synthesized by a one-pot synthesis strategy and characterized by elemental analysis, FTIR and single-crystal X-ray diffraction analysis to be [Ni(DMPT)(H2O)3](NO3)2.3H2O (1) and [Ni(DMPT)(H2O)3](NO3)2.H2O (2). The structures of both complexes were very similar regarding the coordination sphere and counter anions, but differ only in the number of the crystal water molecules. In the case of complex 1, there are three water molecules instead of one H2O molecu…

Inorganic ChemistryX-rayantimikrobiset yhdisteetNi(II) complexesmolecular packings-triazine hydrazoneHirshfeld surfaceantimicrobialkompleksiyhdisteetnikkeli<i>s</i>-triazine hydrazone; molecular packing; X-ray; Ni(II) complexes; Hirshfeld surface; antimicrobialröntgenkristallografia
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Crystal structure and Hirshfeld surface analysis of poly[[bis[μ4-N,N′-(1,3,5-oxadiazinane-3,5-diyl)bis(carbamoylmethanoato)]nickel(II)tetrapotassium]…

2021

The complex nickel(II) anion comprises a pseudomacrocyclic hydrazide-based ligand with an L shape. In the crystal, such anions are connected with the potassium cations and the water solvent mol­ecules, forming a three-dimensional polymeric framework, which is stabilized by an extensive system of hydrogen bonds.

crystal structureCyclohexane conformationshape analysischemistry.chemical_elementCrystal structure010402 general chemistryRing (chemistry)01 natural sciencesResearch Communicationspseudomacrocyclic ligandchemistry.chemical_compoundtemplate reactionSHAPE analysisAmidehirshfeld surface analysisHirshfeld surface analysisGeneral Materials ScienceCrystallography010405 organic chemistryHydrogen bondnickel(ii) complexGeneral ChemistryCondensed Matter Physicsnickel(II) complex3. Good health0104 chemical sciencesTemplate reactionNickelCrystallographychemistryQD901-999Hydratehydrazide-based ligand
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The effect of the fused-ring substituent on anthracene chalcones: crystal structural and DFT studies of 1-(anthracen-9-yl)-3-(naphthalen-2-yl)prop-2-…

2018

Two new anthracene chalcones, namely 1-(anthracen-9-yl)-3-(naphthalen-2-yl)prop-2-en-1-one and 1-(anthracen-9-yl)-3-(pyren-1-yl)prop-2-en-1-one, have been successfully synthesized and the effect of the different fused ring substituent system attached to the anthracene chalcone derivative investigated. These compounds show a very narrow band gap due to the large p-conjugated systems, making them promising candidates as optoelectronic materials. Hirshfeld surface analysis has been carried out to show the contribution of inter­molecular contacts and weak inter­actions to supra­molecular stabilization.

Chalconecrystal structureSubstituentchalconeCrystal structure010402 general chemistry010403 inorganic & nuclear chemistryRing (chemistry)01 natural sciencesMedicinal chemistryDFTResearch Communicationschemistry.chemical_compoundMoietyGeneral Materials ScienceAnthraceneCrystallographyHirshfeld surfaceUV-VisGeneral ChemistryCondensed Matter Physics0104 chemical scienceschemistryQD901-999Density functional theoryEnoneActa crystallographica. Section E, Crystallographic communications
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Crystal structure and Hirshfeld surface analysis of dimethyl (1R*, 3aS*, 3a(1)R*, 6aS*, 9R*, 9aS*)-3a(1),5,6,9a-tetrahydro-1H,4H,9H-1,3a:6a,9-diepoxy…

2019

The title diepoxyphenalene derivative, C17H18O6, comprises a fused cyclic system containing four five-membered rings (two dihydrofuran and two tetrahydrofuran) and one six-membered ring (cyclohexane). The five-membered dihydrofuran and tetrahydrofuran rings adopt envelope conformations, and the six-membered cyclohexane ring adopts a distorted chair conformation. Two methyl carboxylate groups occupy adjacent positions (2- and 3-) on a tetrahydrofuran ring. In the crystal, two pairs of C-H center dot center dot center dot O hydrogen bonds link the molecules to form inversion dimers, enclosing two R-2(2)(6) ring motifs, that stack along the a-axis direction and are arranged in layers parallel …

crystal structureCrystallographyC—H...O hydrogen bondsQD901-999fused hexacyclic systemHirshfeld surface analysisdiepoxyphenalene
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Synthesis and electronic aspects of tetrahydrobenzothienopyrimidine derivatives

2015

Abstract The chemistry of thiophenes, pyrimidines, triazolopyrimidines and benzothiophenes has drawn much attention because of their biological activities. Their interesting properties are connected with their complex π-electron delocalisation effects. Herein the synthesis, crystal and molecular structures at 100 K and DFT calculated structures of three tetrahydrobenzothienopyrimidine derivatives are reported i.e. 4-hydrazino-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidine which was a substrate for 2-phenyl-8,9,10,11-tetrahydro[1]benzothieno[3,2-e][1,2,4]triazolo[1,5-c]pyrimidine and 3-methyl-9,10,11,12-tetrahydro-2H-[1]benzothieno[2′,3′:4,5]pyrimido[1,6-b][1,2,4]triazin-2-one. Moreover t…

Pyrimidinetetrahydrobenzothienopyrimidine derivativesHirshfeld surfaceOrganic ChemistryIntermolecular forceAromaticityCrystal structureRing (chemistry)DFT calculationsAnalytical ChemistryInorganic ChemistryCrystalchemistry.chemical_compoundcrystal structuresHOMA indexchemistryComputational chemistryThiopheneMoleculeSpectroscopyJournal of Molecular Structure
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Crystal structure and Hirshfeld surface analysis of (Z)-4-chloro-N′-(4-oxothiazolidin-2-ylidene)benzenesulfonohydrazide monohydrate

2018

The asymmetric unit of the title thiazole derivative containing a sulfonylhydrazinic moiety, C9H8ClN3O3S2·H2O, consists of two independent molecules and two water molecules. The central parts of the molecules are twisted as both the molecules are bent at both the S and N atoms. In the crystal, N—H...N, N—H...O, C—H...O and O—H...O hydrogen-bonding interactions connect the molecules, forming layers parallel to the ab plane. Two-dimensional fingerprint plots associated with the Hirshfeld surface show that the largest contributions to the crystal packing come from O...H/H...O (32.9%) and H...H (22.6%) interactions.

thiazole derivativecrystal structureCrystallography010405 organic chemistryHydrogen bondBent molecular geometryGeneral ChemistryCrystal structure010403 inorganic & nuclear chemistryCondensed Matter PhysicsHydrazide01 natural sciences0104 chemical sciencesCrystalchemistry.chemical_compoundCrystallographychemistryQD901-999hydrogen bondsMoietyHirshfeld surface analysisGeneral Materials SciencePhysics::Chemical PhysicsBenzeneDerivative (chemistry)Acta Crystallographica Section E: Crystallographic Communications
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Isostructural Inorganic–Organic Piperazine-1,4-diium Chlorido- and Bromidoantimonate(III) Monohydrates: Octahedral Distortions and Hydrogen Bonds

2020

Halogenidoantimonate(III) monohydrates of the (C4H12N2)[SbX5]&middot

Models Molecularcrystal structureMaterials scienceHydrogenSurface PropertiesMolecular ConformationPharmaceutical Sciencechemistry.chemical_elementCrystal structurelow temperatureArticleAnalytical Chemistrylcsh:QD241-441lcsh:Organic chemistryDrug DiscoveryMoleculeHirshfeld surface analysisPhysical and Theoretical ChemistryIsostructuralOrganic Chemicalsoctahedral distortionPiperazineHydrogen bondOrganic Chemistryhydrogen bondinginorganic–organic hybrid materialsCrystallographyOctahedronchemistryChemistry (miscellaneous)Inorganic ChemicalsMolecular MedicineWater of crystallizationhalogenidoantimonates(III)Monoclinic crystal systemMolecules
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Crystal structure, Hirshfeld surface analysis and electrostatic potential study of naturally occurring cassane-type diterpenoid Pulcherrimin C monohy…

2019

Single crystal X-ray diffraction analysis and Hirshfeld surface analysis of the title compound were carried out to analyse qu­anti­tatively the inter­molecular inter­actions involved in the crystal packing. The electrostatic potential surface was generated over the Hirshfeld surface to visualize the potential active sites.

crystal structureCrystal structurecassane-type diterpenoids010402 general chemistry010403 inorganic & nuclear chemistryRing (chemistry)01 natural sciencesResearch Communicationslcsh:ChemistryCrystalchemistry.chemical_compoundFuranHirshfeld surface analysisGeneral Materials SciencebiologyHydrogen bondGeneral ChemistryCondensed Matter PhysicsCaesalpinia pulcherrimabiology.organism_classificationTerpenoid0104 chemical sciencesCaesalpinia pulcherrimapulcherrimin CCrystallographyelectrostatic potentiallcsh:QD1-999chemistryActa Crystallographica Section E Crystallographic Communications
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